PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 323aa    MW: 36774.5 Da    PI: 8.4127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708338genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-06165184120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C+ C k+F+r  nL+ H+
  676708338 165 FSCHVCFKTFNRYNNLQMHM 184
                89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-5146187No hitNo description
PROSITE profilePS5015710.055165192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-4165184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-5234269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKSLNKHSQM ISSLSNHCSP YSMESPQYEI SLSSSSEKPK DHFQSFDLYR DLTQNPSNNN  60
TLIEPLPLID RINLNPSLNL RPKPSYVEEE DDDGEEDEDN AAVDVSLHIG LPGSGYSSND  120
AKQPKKKNGK EIVTYDARKN IENEVSGKAY WIPAVEQIII GFTHFSCHVC FKTFNRYNNL  180
QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCKN HIDHPRSKPL KDFRTLQTHY  240
KRKHGQKPYS CRMCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGPGH  300
GPYPTGMFDE QPSYSSVSET LFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174737.21e-176protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-178TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLQ700E71e-178Q700E7_ARATH; At1g34790
STRINGAT1G34790.11e-176(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-179C2H2 family protein